The dynamics and social organization of innovation in the field of oncology/Bibliography

General
Use of absrtacts
 * Assessing the Eventual Publication of Clinical Trial Abstracts Submitted to a Large Annual Oncology Meeting

Document tagging and other text-mining Funding data Innovation dynamics Topical burst detection Name disambiguation
 * OpenMinTeD, European text-mining infrastructure
 * NCBI text mining web services
 * EuropePMC text mined annotations
 * Funding Data from Publication Acknowledgements: Coverage, Uses and Limitations
 * A triple helix model of medical innovation: Supply, demand, and technological capabilities in terms of Medical Subject Headings
 * Bursty and Hierarchical Structure in Streams, implementations in C, python
 * Mapping topics and topic bursts in PNAS
 * Author name disambiguation, a recent review
 * Exploiting citation networks for large-scale author name disambiguation, a recent paper from ppl at ETH-Zurich

Ontologies


 * Disease Ontology

Evolving communities
 * Evolving network structure of academic institutions

Word embedding
Algorithm and improvements Changes in meaning
 * king - man + woman is queen; but why?
 * What are some interesting Word2Vec results?
 * Linguistic Regularities in Sparse and Explicit Word Representations
 * Document Classification by Inversion of Distributed Language Representations
 * A Dual Embedding Space Model for Document Ranking
 * Diachronic Word Embeddings Reveal Statistical Laws of Semantic Change
 * Statistically Significant Detection of Linguistic Change

Stochastic block models and description length minimization

 * Inferring the mesoscale structure of layered, edge-valued and time-varying networks
 * Hierarchical Block Structures and High-Resolution Model Selection in Large Networks
 * Model Selection and Hypothesis Testing for Large-Scale Network Models with Overlapping Groups

Visualizations

 * Visualizing genomic testing in the cancer clinical trials portfolio

Medical ontologies

 * The NCI has a dictionary of cancer terms with 8,389 terms


 * The NCI has a drug dictionary


 * the NCI has a dictionary of genetics terms


 * See also the NCI list of cancer types

There are also more sophisticated ontologies:


 * For instance, there is an NCI Thesaurus
 * BioPortal keeps a database of ontologies

News
Social media buzz Core set hypothesis Transparency
 * Social (Media) Oncology Project
 * A Countdown: Top 10 Problems With NCI-Designated Cancer Centers, item 2.

Sanofi, Novartis, NCI, Ranbaxy top missing data list as Shire most transparent

ASCO and ESMO

ESMO's not what it used to be—and that's a good thing, executives say

Gabriel Varela

 * BRCA Patients and Clinical Collectives: New Configurations of Action in Cancer Genetics Practices Pascale Bourret