WikiJournal Preprints/Speciation by reinforcement

History and terminology
Reinforcement has endured a complex history with its popularity among scholars having changed over time. Jerry Coyne and H. Allen Orr contend that the theory of reinforcement went through three phases of historical development: Sometimes called the Wallace effect, reinforcement was originally proposed by Alfred Russel Wallace in 1889. His hypothesis differed markedly from the modern conception in that it focused on post-zygotic isolation, strengthened by group selection. Dobzhansky was the first to provide a thorough description of the process in 1937, though the term itself was not coined until 1955 by W. Frank Blair. In 1930, Ronald Fisher laid out the first genetic description of the process of reinforcement in The Genetical Theory of Natural Selection, and in 1965 and 1970 the first computer simulations were run to test for its plausibility. Later population genetic and quantitative genetic studies were conducted showing that completely unfit hybrids lead unequivocally to an increase in pre-zygotic isolation.
 * 1) plausibility based on unfit hybrids
 * 2) implausibility based on hybrids having some fitness
 * 3) plausibility based on empirical studies and biologically complex and realistic models

Dobzhansky's idea gained significant support; he suggested that it illustrated the final step in speciation, for example after an allopatric population comes into secondary contact. In the 1980s, many evolutionary biologists began to doubt the plausibility of the idea, based not on empirical evidence, but largely on the growth of theory that deemed it an unlikely mechanism of reproductive isolation. A number of theoretical objections arose at the time and are addressed in later sections below.

By the early 1990s, reinforcement saw a revival in popularity among evolutionary biologists; due primarily from a sudden increase in data—empirical evidence from studies in labs and largely by examples found in nature. Further, computer simulations of the genetics and migration patterns of populations found, "something looking like reinforcement". The most recent theoretical work on speciation has come from several studies using highly complex computer simulations; all of which came to similar conclusions: that reinforcement is plausible under several conditions, and in many cases, is easier than previously thought.

Confusion exists around the meaning of the term reinforcement. It was first used to describe the observed mating call differences in Gastrophryne frogs within a secondary contact hybrid zone. The term secondary contact has also been used to describe reinforcement in the context of an allopatrically separated population experiencing contact after the loss of a geographic barrier. The term "the Wallace effect" is similar to reinforcement, but is rarely used. Roger K. Butlin demarcated incomplete post-zygotic isolation from complete isolation, referring to the evolution of premating reproductive from incomplete isolation as reinforcement and from completely isolation as reproductive character displacement. Daniel J. Howard considered reproductive character displacement to represent either assortive mating or the divergence of traits for mate recognition (specifically between sympatric populations). Reinforcement, under his definition, included pre-zygotic divergence and complete post-zygotic isolation. Maria R. Servedio and Mohamed A.F. Noor include any detected increase in pre-zygotic isolation as reinforcement, as long as it is a response to selection against mating between two different species. Coyne and Orr contend that, "true reinforcement is restricted to cases in which isolation is enhanced between taxa that can still exchange genes".

Models
One of the strongest forms of reproductive isolation in nature is sexual isolation: traits in organisms involving mating. This fact has led to the idea that, because selection acts so strongly on mating traits, it may be involved in the process of speciation. The influence of natural selection against hybrids on the evolution of premating isolation is reinforcement, and it can happen under any mode of speciation (e.g. allopatry, parapatry, sympatry, ecological, etc.) It necessitates two forces of evolution that act on mate choice: natural selection and gene flow. Selection acts as the main driver of reinforcement as it selects against hybrid genotypes that are of low-fitness, regardless if individual preferences have no effect on survival and reproduction. Gene flow acts as the primary opposing force against reinforcement, as the exchange of genes between individuals leading to hybrids cause the genotypes to homogenize across the incipient species. Butlin laid out four primary criteria for reinforcement to be detected in natural or laboratory populations:
 * Gene flow between two taxa exists or can be established to have existed at some point.
 * There is divergence of mating-associated traits between two taxa.
 * Patterns of mating are modified, limiting the production of low fitness hybrids.
 * Other selection pressures leading to divergence of the mate-recognition system have not occurred.

After speciation by reinforcement occurs, changes after complete reproductive isolation (and further isolation thereafter) are a form of reproductive character displacement. A common signature of reinforcement's occurrence in nature is that of reproductive character displacement; characteristics of a population diverge in sympatry but not allopatry. One difficulty in detection is that ecological character displacement can result in the same patterns. Further, gene flow can diminish the isolation found in sympatric populations. Two important factors in the outcome of the process rely on: 1) the specific mechanisms that causes pre-zygotic isolation, and 2) the number of alleles altered by mutations affecting mate choice. In instances of peripatric speciation, reinforcement is unlikely to complete speciation in the case that the peripherally isolated population comes into secondary contact with the main population. In sympatric speciation, selection against hybrids is required; therefore reinforcement can play a role, given the evolution of some form of fitness trade-offs. In sympatry, patterns of strong mating discrimination are often observed—being attributed to reinforcement. Reinforcement is thought to be the agent of gametic isolation.

Genetics
The underlying genetics of reinforcement can be understood by an ideal model of two haploid populations experiencing an increase in linkage disequilibrium. Here, selection rejects low fitness $$Bc$$ or $$bC$$ allele combinations while favoring combinations of $$BC$$ alleles (in the first subpopulation) and $$bc$$ alleles (in the second subpopulation). The third locus $$A$$ or $$a$$ (the assortive mating alleles) has an effect on mating pattern but is not under direct selection. If selection at $$B$$ and $$C$$ cause changes in the frequency of allele $$A$$, assortive mating is promoted, resulting in reinforcement. Both selection and assortive mating are necessary, that is, that matings of $$A \times A$$ and $$a \times a$$ are more common than matings of $$a \times A$$ and $$A \times a$$. A restriction of migration between populations can further increase the chance of reinforcement, as it decreases the probability of the differing genotypes to exchange. An alternative model exists to address the antagonism of recombination, as it can reduce the association between the alleles that involve fitness and the assortive mating alleles that do not. Genetic models often differ in terms of the number of traits associated with loci; with some relying on one locus per trait and others on polygenic traits.

Population structures
The structure and migration patterns of a population can affect the process of speciation by reinforcement. It has been shown to occur under an island model, harboring conditions with infrequent migrations occurring in one direction, and in symmetric migration models where species migrate evenly back and forth between populations. Reinforcement can also occur in single populations, mosaic hybrid zones, and in parapatric populations with narrow contact zones. Population densities are an important factor in reinforcement, often in conjunction with extinction. It is possible that, when two species come into secondary contact, one population can become extinct—primarily due to low hybrid fitness accompanied by high population growth rates. Extinction is less likely if the hybrids are inviable instead of infertile, as fertile individuals can still survive long enough to reproduce.

Selection
Speciation by reinforcement relies directly on selection to favor an increase in pre-zygotic isolation, and the nature of selection's role in reinforcement has been widely discussed, with models applying varying approaches. Selection acting on hybrids can occur in several different ways. All hybrids produced may be equality low-fitness, conferring a broad disadvantage. In other cases, selection may favor multiple and varying phenotypes such as in the case of a mosaic hybrid zone. Natural selection can act on specific alleles both directly or indirectly. Under direct selection, the alleles causing increased premating isolation diverge because they directly affect viability; the evolution of premating isolation in this case can mimic reinforcement but is arguably a different process. In cases where an allele is indirectly selected, its frequency increases due to linkage disequilibrium; this is the case under more standard concepts of reinforcement. The condition of the hybrids under selection can play a role in post-zygotic isolation, as hybrid inviability and sterility prohibit gene flow between populations. Selection against the hybrids can even be driven by any failure to obtain a mate, as it is effectively indistinguishable from sterility—each circumstance results in no offspring.

Mating and mate preference
Some initial divergence in mate preference must be present for reinforcement to occur. Any traits that promote isolation may be subjected to reinforcement such as mating signals (e.g. courtship display), signal responses, the location of breeding grounds, the timing of mating (i.e. allochrony), or even egg receptivity. Individuals may also discriminate against mates that differ in various traits such as mating call or morphology. Many of these examples are described below.

Evidence
Evidence for speciation by reinforcement has been gathered since the 1990s, and along with data from comparative studies and laboratory experiments, has overcome many of the objections to the theory. Reinforcement can be shown to be occurring (or to have occurred in the past) by measuring the strength of pre-zygotic isolation in a sympatric population in comparison to an allopatric population of the same species. Comparative studies of this allow for determining large-scale patterns in nature across various taxa. Mating patterns in hybrid zones can also be used to detect reinforcement. Reproductive character displacement is seen as a result of reinforcement, so many of the cases in nature express this pattern in sympatry. Reinforcement's prevalence is unknown, but the patterns of reproductive character displacement are found across numerous taxa (vertebrates, invertebrates, plants, and fungi), and is considered to be a common occurrence in nature. Plants are thought to provide suitable conditions for reinforcement to occur. This is due to a number of factors such as the unpredictability of pollination, pollen vectors, hybridization, and hybrid zones. The study of plants experiencing speciation by reinforcement has largely been overlooked by researchers; however, there is evidence of its occurrence in them. It has been argued that reinforcement is extremely common in birds and has been documented in a wide range of bird species. Studies of reinforcement in nature often prove difficult, as alternative explanations for the detected patterns can be asserted. Nevertheless, empirical evidence exists for reinforcement occurring across various taxa and its role in precipitating speciation is conclusive.

Laboratory experiments
Laboratory studies that explicitly test for reinforcement are limited. In general, two types of experiments have been conducted: using artificial selection to mimic natural selection that eliminates the hybrids (often called "destroy-the-hybrids"), and using disruptive selection to select for a trait (regardless of its function in sexual reproduction). Many experiments using the destroy-the-hybrids technique are generally cited as supportive of reinforcement; however, some researchers such as Coyne and Orr and William R. Rice and Ellen E. Hostert contend that they do not truly model reinforcement, as gene flow is completely restricted between two populations. The table below summarizes some of the laboratory experiments that are often cited as testing reinforcement in some form.

Comparative studies


Assortive mating is expected to increase among sympatric populations experiencing reinforcement. This fact allows for the direct comparison of the strength of pre-zygotic isolation in sympatry and allopatry between different experiments and studies. Coyne and Orr surveyed 171 species pairs, collecting data on their geographic mode, genetic distance, and strength of both pre-zygotic and post-zygotic isolation; finding that pre-zygotic isolation was significantly stronger in sympatric pairs, correlating with the ages of the species. Additionally, the strength of post-zygotic isolation was not different between sympatric and allopatric pairs.

This finding lends support to the predictions of speciation by reinforcement and correlates well with another later study by Howard. In his study, 48 studies with observed reproductive character displacement (including plants, insects, crustaceans, molluscs, fish, amphibians, reptiles, birds, and mammals) were analyzed. The cases met several criteria of reinforcement such as the trait in question serving as a reproductive barrier and if there existed clear patterns of sympatry versus allopatry. Out of the 48 candidates, 69 percent (33 cases) found enhanced isolation in sympatry, suggesting that the pattern predicted by reinforcement is common in nature. In addition to Howard's comparative study, he guarded against the potential for positive-result publication bias by surveying 37 studies of hybrid zones. A prediction of reinforcement is that assortive mating should be common in hybrid zones; a prediction that was confirmed in 19 of the 37 cases.

A survey of the rates of speciation in fish and their associated hybrid zones found similar patterns in sympatry, supporting the occurrence of reinforcement. One study in the plants Glycine and Silene; however, did not find enhanced isolation.

Alternative hypotheses
Various alternative explanations for the patterns observed in nature have been proposed. There is no single, overarching signature of reinforcement; however, there are two proposed possibilities: that of sex asymmetry (where females in sympatric populations are forced to become choosy in the face of two differing males) and that of allelic dominance: any of the alleles experiencing selection for isolation should be dominant. Though this signature does not fully account for fixation probabilities or ecological character displacement. Coyne and Orr extend the sex asymmetry signature and contend that, regardless of the change seen in females and males in sympatry, isolation is driven more by females.

Ecological or ethological influences
Ecology can also play a role in the observed patterns—called ecological character displacement. Natural selection may drive the reduction of an overlap of niches between species instead of acting to reduce hybridization Though one experiment in stickleback fish that explicitly tested this hypotheses found no evidence.

Species interactions can also result in reproductive character displacement (in both mate preference or mating signal). Examples include predation and competition pressures, parasites, deceptive pollination, and mimicry. Because these and other factors can result in reproductive character displacement, Conrad J. Hoskin and Megan Higgie give five criteria for reinforcement to be distinguished between ecological and ethological influences: "(1) mating traits are identified in the focal species; (2) mating traits are affected by a species interaction, such that selection on mating traits is likely; (3) species interactions differ among populations (present vs. absent, or different species interactions affecting mating traits in each population); (4) mating traits (signal and/or preference) differ among populations due to differences in species interactions; (5) speciation requires showing that mating trait divergence results in complete or near complete sexual isolation among populations. Results will be most informative in a well-resolved biogeographic setting where the relationship and history among populations is known."

Fusion
It is possible that the pattern of enhanced isolation could simply be a temporary outcome of secondary contact where two allopatric species already have a varying range of pre-zygotic isolation: with some exhibiting more than others. Those species pairs that have weaker pre-zygotic isolation will eventually fuse, losing their distinctiveness. This hypothesis does not explain the fact that individual species in allopatry, experiencing consistent gene flow, would not differ in levels of gene flow upon secondary contact. Furthermore, patterns detected in Drosophila find high levels of pre-zygotic isolation in sympatry but not in allopatry. The fusion hypothesis predicts that strong isolation should be found in both allopatry and sympatry. This fusion process is thought to occur in nature, but does not fully explain the patterns found with reinforcement.

Sympatry
It is possible that the process of sympatric speciation itself may result in the observed patterns of reinforcement. One method of distinguishing between the two is to construct a phylogenetic history of the species, as the strength of pre-zygotic isolation between a group of related species should differ according to how they speciated in the past. Two other ways to determine if reinforcement occurs (as opposed to sympatric speciation) are:
 * if two recently speciated taxa do not show signs of post-zygotic isolation of both sympatric and allopatric populations (in sympatric speciation, post-zygotic isolation is not a prerequisite);
 * if a cline exists between two species over a range of traits (sympatric speciation does not require a cline to exist at all).

Sexual selection
A Fisherian runaway process can occur during the process of reinforcement, increasing mate discrimination rapidly. Additionally, when there is a low cost to female mate preferences, changes in male phenotypes can result, expressing a pattern identical to that of reproductive character displacement. Post-zygotic isolation is not needed, initiated simply by the fact that unfit hybrids cannot get mates.

Arguments against reinforcement
A number of objections were put forth, mainly during the 1980s, arguing that reinforcement is implausible. Most rely on theoretical work which suggested that the antagonism between the forces of natural selection and gene flow were the largest barriers to its feasibility. These objections have since been largely contradicted by evidence from nature and additional models.

Concerns about hybrid fitness playing a role in reinforcement has led to objections based on the relationship between selection and recombination. That is, if gene flow is not zero (if hybrids aren't completely unfit), selection cannot drive the fixation of alleles for pre-zygotic isolation. For example: If population $$X$$ has the pre-zygotic isolating allele $$A$$ and the high fitness, post-zygotic alleles $$B$$ and $$C$$; and population $$Y$$ has the pre-zygotic allele $$a$$ and the high fitness, post-zygotic alleles $$b$$ and $$c$$, both $$ABC$$ and $$abc$$ genotypes will experience recombination in the face of gene flow. Somehow, the populations must be maintained.

In addition, specific alleles that have a selective advantage within the overlapped sympatric populations, such as alleles causing prezygotic isolation, are only useful within that population. However, if they are selectively advantageous, gene flow should allow the alleles to spread throughout both the sympatric and allopatric populations. To prevent this, the alleles would have to be deleterious in the other population. This is not without problems, as gene flow from the presumably large allopatric regions could overwhelm the area when two populations overlap. For reinforcement to work, gene flow must be present, but very limited.

Recent studies suggest reinforcement can occur under a wider range of conditions than previously thought  and that the effect of gene flow can be overcome by selection. For example, the two species Drosophila santomea and D. yakuba on the African island São Tomé occasionally hybridize with one another, resulting in fertile female offspring and sterile male offspring. This natural setting was reproduced in the laboratory, directly modeling reinforcement: the removal of some hybrids and the allowance of varying levels of gene flow. The results of the experiment strongly suggested that reinforcement works under a variety of conditions, with the evolution of sexual isolation arising in 5–10 fruit fly generations.

In conjunction with the fusion hypothesis discussed above, reinforcement can be thought of as a race against both fusion and extinction. The production of unfit hybrids is effectively the same as a heterozygote disadvantage; whereby a deviation from genetic equilibrium causes the loss of the unfit allele. This effect would result in the extinction of one of the populations. This objection is overcome when both populations are not subject to the same ecological conditions. However, it is still possible for extinction of one population to occur, as has been shown in population simulations. For reinforcement to occur, pre-zygotic isolation must happen quickly.